Search results for "Organic matrix"

showing 10 items of 26 documents

Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis - The saccharide moieties and their localization.

2018

11 pages; International audience; To construct calcium carbonate skeletons of sophisticated architecture, scleractinian corals secrete an extracellular skeletal organic matrix (SOM) from aboral ectodermal cells. The SOM, which is composed of proteins, saccharides, and lipids, performs functions critical for skeleton formation. Even though polysaccharides constitute the major component of the SOM, its contribution to coral skeleton formation is poorly understood. To this end, we analyzed the SOM of the massive colonial coral, Porites australiensis, the skeleton of which has drawn great research interest because it records environmental conditions throughout the life of the colony. The coral …

0106 biological sciences0301 basic medicineBiomineralizationGlycanCoralMatrix (biology)Polysaccharide010603 evolutionary biology01 natural sciencesCalcium Carbonate03 medical and health sciencesCalcification PhysiologicSaccharideStructural BiologyMonosaccharideAnimals14. Life underwater[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsSkeletonchemistry.chemical_classificationbiologySkeletal organic matrixLectinProteinsAnthozoaSkeleton (computer programming)Porites australiensisExtracellular Matrix030104 developmental biologyBiochemistrychemistrybiology.proteinMicroscopy Electron ScanningCoralCrystallizationBiomineralization
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Single nanogranules preserve intracrystalline amorphicity in biominerals.

2015

We revisit the ultrastructural features of different calcareous biominerals and identify remarkable similarities: taxonomically very distant species show a common nanogranular structure, even if different extracellular secretion patterns are employed or calcium carbonate polymorphs formed. By these analyses, we elucidate the locus of the small fraction of intracrystalline organic matrix revealing its intergranular character and localize the intracrystalline amorphous calcium carbonate moiety commonly found in mesocrystalline biominerals and provide a first explanation for the pathway by which it is preserved.

0301 basic medicineMaterials scienceMechanical EngineeringMineralogy02 engineering and technology[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterials021001 nanoscience & nanotechnologyAmorphous calcium carbonate[SDV.IB.BIO] Life Sciences [q-bio]/Bioengineering/Biomaterials03 medical and health scienceschemistry.chemical_compound030104 developmental biologyCalcium carbonatechemistryMechanics of MaterialsBiophysicsGeneral Materials ScienceOrganic matrix0210 nano-technologyMesocrystalCalcareousComputingMilieux_MISCELLANEOUSBiomineralization
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Characterization of crustacyanin-A2 subunit as a component of the organic matrix of gastroliths from the crayfish Cherax quadricarinatus.

2009

AbstractLike the lobsters, some terrestrial crabs and other crayfishes, the Australian red claw crayfish, Cherax quadricarinatus, elaborates in its stomach wall calcium storage structures called gastroliths. For understanding the cyclic elaboration and stabilization of these amorphous calcified structures, we studied the organic matrix (OM) of these paired biomineralizations. After decalcification with acetic acid, we analysed the proteinaceous components of an acetic acid-insoluble fraction by two-dimensional electrophoresis. Nine spots were digested by trpsin and the tryptic peptides were sequenced by nanoLC-nanoESI-MS/MS mass spectrometry. About 100 peptidic sequences were compared to se…

0303 health sciencesMaterials scienceCrustacyanin A2 subunitbiologyProtein subunit030302 biochemistry & molecular biologybiology.organism_classificationCrayfish[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsHomology (biology)[SDV.IB.BIO] Life Sciences [q-bio]/Bioengineering/Biomaterials03 medical and health sciencesAcetic acidchemistry.chemical_compoundchemistryBiochemistryHomarus gammarusCherax quadricarinatusOrganic matrix[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsComputingMilieux_MISCELLANEOUS030304 developmental biology
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Biomineralization toolkit: the importance of sample cleaning prior to the characterization of biomineral proteomes.

2013

In an interesting work published recently in PNAS, Drake et al. (1) presented a proteomic study of the skeleton from the stony coral Stylophora pistillata . This study identified proteins that are associated to the mineral phase (i.e., that potentially contribute to shape the skeleton). In other words, this set of proteins is supposed to represent the so-called “biomineralization toolkit.” Although some of the 36 proteins reported in Drake et al. (1) appear as genuine extracellular matrix (ECM) proteins related to biomineralization, such as coral acid-rich proteins or carbonic anhydrase, some others are obvious intracellular contaminants that should not be considered as skeletal organic mat…

0303 health sciencesMultidisciplinaryAnatomyBiologyStylophora pistillata010502 geochemistry & geophysicsbiology.organism_classificationAnthozoa[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterials01 natural sciencesExtracellular matrix03 medical and health sciencesBiochemistryProteomeAnimalsOrganic matrixLetters[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsCytoskeletonComputingMilieux_MISCELLANEOUS030304 developmental biology0105 earth and related environmental sciencesBiomineralization
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Synthesis of calcium carbonate biological materials: how many proteins are needed?

2013

In Nature, calcium carbonate biomineralizations are the most abundant mineralized structures of biological origin. Because many exhibit remarkable characteristics, several attempts have been made to use them as substitution materials for bone reconstruction or as models for generating biomimetic composites that exhibit tailored properties. CaCO3biomineralizations contain small amounts of amalgamate of proteins and polysaccharides that are secreted during the calcification process. They contribute to control the morphology of the crystallites and to spatially organize them in well-defined microstructures. These macromolecules, collectively defined as the skeletal matrix, have been the focus …

Biomimetic materialsMaterials scienceNanotechnology02 engineering and technologyProteomics03 medical and health scienceschemistry.chemical_compoundmolluscproteomicsGeneral Materials ScienceOrganic matrixcalcium carbonate[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/Biomaterialscoral030304 developmental biologyorganic matrix0303 health sciencesMechanical EngineeringMean value021001 nanoscience & nanotechnologybiomineralization[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsBiological materialsCalcium carbonatechemistryMechanics of Materialsshell0210 nano-technologyproteinBiomineralizationMacromolecule
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Phosphorylation of serine residues is fundamental for the calcium-binding ability of Orchestin, a soluble matrix protein from crustacean calcium stor…

2003

International audience; Orchestia cavimana is a terrestrial crustacean, which cyclically stores calcium in diverticula of the midgut, in the form of calcified amorphous concretions. These concretions are associated with a proteinaceous matrix, the main constituent of the soluble matrix is Orchestin, an acidic calcium-binding protein [Testenière et al., Biochem. J. 361 (2002) 327-335]. In the present paper, we clearly demonstrate that Orchestin is phosphorylated on serine and tyrosine residues, but that calcium binding only occurs via the phosphoserine residues. To our knowledge, this is the first example of an invertebrate mineralization for which a post-translational modification is clearl…

BiomineralizationMESH: Amino Acid SequenceMESH: Calcium-Binding ProteinsMatrix (biology)01 natural sciencesBiochemistryCalcium in biologyMESH: TyrosineSerinechemistry.chemical_compoundMESH: Structure-Activity RelationshipStructural BiologyCrustaceaSerineElectrophoresis Gel Two-DimensionalMESH: AnimalsTyrosinePhosphorylation0303 health sciencesBiochemistryMESH: CalciumPhosphorylationElectrophoresis Polyacrylamide GelOrganic matrixProtein BindingMolecular Sequence DataBiophysicschemistry.chemical_elementCrustaceanCalciumBiology010402 general chemistryMESH: Calcification Physiologic03 medical and health sciencesStructure-Activity RelationshipCalcification PhysiologicMESH: CrustaceaGeneticsAnimalsMESH: Protein Binding[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyAmino Acid SequenceMESH: SerineMolecular Biology030304 developmental biologyCalcium metabolismMESH: Molecular Sequence DataMESH: PhosphorylationCalcium-Binding ProteinsCell BiologyMESH: Electrophoresis Gel Two-Dimensional0104 chemical scienceschemistryPhosphoserineMESH: Protein Processing Post-TranslationalTyrosineCalciumCalcium bindingProtein Processing Post-TranslationalMESH: Electrophoresis Polyacrylamide Gel
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Biominéralisation chez les Céphalopodes (Mollusca) : processus moléculaires et évolution

2021

Molluscs constitute one of the most diversified phyla within metazoans, known for their ability to mineralize a shell. The shell biomineralization is a genetically controlled process that is performed extracellularly via a calcifying organic matrix. This latter, which remains finally occluded (at least, partially) into the shell, is a mixture of proteins, glycoproteins, lipids and polysaccharides, that are collectively secreted by the external calcifying epithelium of the mantle. Today, the shell matrix is usually considered as the ‘molecular toolbox’ for constructing the shell. Since its discovery, it has been the focus of numerous studies, but mainly on bivalves and gastropods leaving cep…

BiomineralizationProteomicsBiominéralisationCéphalopodeProtéomiqueEvolutionMollusqueMatrice organiqueOrganic matrixMollusc[SDU.STU.PG] Sciences of the Universe [physics]/Earth Sciences/Paleontology[SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/PaleontologyCephalopod
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Inorganic/Organic interface in biominerals : unveiling the complex structure of two calcitic biomineral models, the red coral Corallium rubrum and th…

2022

Biominerals are organo-minerals structures produced by living systems. Since the Cambrian, they contribute to the adaptation of living organisms to different environments by fulfilling a variety of combined functions that go along with adapted morphologies. One of the aims of biomineralization is to understand how organisms "sculpt" these complex morphologies, in particular at nano and molecular scales. The aim of this PhD work was to understand the complex relationships between the organic and mineral phases. To this end, I focused my analyses on two calcitic biomineral models: 1) the red coral Corallium rubrum and 2) the prismatic shell of the Mediterranean fan mussel Pinna nobilis. My wo…

Chimie d'interface[SDV.EE] Life Sciences [q-bio]/Ecology environmentBiomineralsMatrice organiqueOrganic matrixChemistry of interfaceBiominérauxCorallium rubrumPinna nobilis
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Osteonectin Expression in Odontogenous and Non-odontogenous Tumors and Tumor-like Lesions of the Skull and Jaw Bones

1988

The organic matrix of osseous and odontogenic tissues is formed mainly by collagen type I. In addition there is a considerable bulk of noncollagenous proteins (Prince et al. 1987) in bone among which osteonectin represents the greatest amount. This protein, first isolated by Termine et al. (1981) has a molecular weight of 29 kD and possibly is involved in the mineralization process of collagenous fibrils in bone (Romberg et al. 1985). Recently osteonectin could be demonstrated in bone tumors and normal bone and has been considered as a marker for bone tumor cells (Schulz et al. 1985; Jundt et al. 1987). The aim of the present study was to examine the expression of osteonectin in odontogenou…

Collagen typebiologyChemistryTumor cellsAnatomyHistogenesismusculoskeletal systemOdontogenicSkullmedicine.anatomical_structureNormal bonemedicinebiology.proteinOrganic matrixOsteonectin
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Pmarg-pearlin is a matrix protein involved in nacre framework formation in the pearl oyster Pinctada margaritifera.

2011

11 pages; International audience; The shell of pearl oysters is organized in multiple layers of CaCO(3) crystallites packed together in an organic matrix. Relationships between the components of the organic matrix and mechanisms of nacre formation currently constitute the main focus of research into biomineralization. In this study, we characterized the pearlin protein from the oyster Pinctada margaritifera (Pmarg); this shares structural features with other members of a matrix protein family, N14/N16/pearlin. Pmarg pearlin exhibits calcium- and chitin-binding properties. Pmarg pearlin transcripts are distinctively localized in the mineralizing tissue responsible for nacre formation. More s…

OysterPteriidaeMolecular Sequence Dataengineering.materialBiologyMatrix (biology)010402 general chemistry01 natural sciencesBiochemistry03 medical and health sciencesProtein structureAnimal Shellsbiology.animalAnimalsAmino Acid SequencePinctadaRNA Messenger[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular Biologyglycoproteins030304 developmental biologyorganic matrix0303 health sciencesExtracellular Matrix ProteinsEcologyAragoniteOrganic ChemistryPinctada margaritiferabiology.organism_classificationbiomineralization[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterials0104 chemical sciencesCell biologyprotein structuresengineeringMolecular Medicinepearl oysterPearlBiomineralization
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